To make the cupcakes, preheat your oven to 350 degrees Fahrenheit. Line a muffin tin with paper liners.
In a medium bowl, whisk together the flour, baking powder, baking soda, cinnamon, nutmeg, and salt.
1½ cup Flour, 1 teaspoon Baking soda, ¼ teaspoon Baking powder, ½ teaspoon Salt, 1 teaspoon Cinnamon, ¼ teaspoon Nutmeg
In a large bowl, cream together the butter and brown sugar until light and fluffy. Beat in the eggs one at a time, then stir in the vanilla extract.
½ cup Butter, ⅔ cup Brown sugar, 2 Eggs, 2 teaspoon Vanilla extract
Add the dry ingredients to the wet ingredients alternately with the apple cider, beating until just combined. Mixture will be thick.
⅓ cup Apple cider
Scoop 2 tablespoons of the batter into each cupcake liner. Add 1 tablespoon of apple topping onto each cupcake.
Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean. Let the cupcakes cool completely before frosting.